Hey :)
The easiest way to do this is as follows:
1. Open up the DNS Console
2. Right click and open the Properties for the Server
3. Select the Interfaces tab
4. Change it so DNS only listens on the interface for 192.168.16.0/24
5. Manually delete any Host (A) records listed on the other subnet
That's all you have to do, it prevents the other interface registering entirely.
Chris