Are you using DNS forwarders on your DNS servers? I have noticed this behavior sometimes when pointing to ISP servers instead of just using the standard root hints. You might try removing the DNS forwarders, clearing cache on the servers and then flushing the DNS table on the exchange server.
You could also try setting the exchange server to force dns queries for mail to be sent to a specific server (like 4.2.2.2 - Verizon DNS) and see if that makes a difference.