In your server.xml just add suitable ciphers= and sslProtocol= entries e.g.
Restart tomcat, then check if your sill supporting any weak (<128 bit) Ciphers, by typing the following at a command prompt (Or Dos Prompt if you download the tool):
openssl s_client -connect aaa.bbb.ccc.ddd:443 -ssl2
openssl s_client -connect aaa.bbb.ccc.ddd:443 -ssl3 -cipher LOW
Where: aaa.bbb.ccc.ddd is either you Website's hostname or IP.