The so called merger of the two zones won't happen. Nor the overwrite, the DNS zone that has just had the replication scope changed from domain to forest will not replicate to forest partition as there is a zone that already exists in there with that name. You can test this by creating two same name zone in both partitions and you may come across an error as "The DNS server encountered error 32 attempting to load zone test.test from Active Directory. The DNS server will attempt to load this zone again on the next timeout cycle. This can be caused by high Active Directory load and may be a transient condition."
What I would recommend is exporting the additional records and manually or via scripts add it to the forest wide replication zone and then delete the domain based one.